Amphimedon_queenslandica_gca000090795v2rs

We have frozen Ensembl Rapid Release

All Rapid Release data, including release 65, has been uploaded into the new Ensembl Beta site.

New genome data that would previously have been released on Rapid Release will only be released to the new Ensembl Beta site.
We will no longer release data to the Ensembl Rapid Release browser and Rapid Release FTP site.

Go to beta.ensembl.org now

If you feel that this change will have a significant impact on your analyses, please get in touch

More ▼

Highlighted species

All species

Search Amphimedon queenslandica

View karyotype

Example region

Genome assembly: v1.1 (GCA_000090795.2)

Download DNA sequence (FASTA)

Display your data in Ensembl

Example gene

Example transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

Download FASTA, GTF or GFF3 files for genes, cDNAs, ncRNA, proteins

Statistics

Summary

Assembly	v1.1, INSDC Assembly GCA_000090795.2,
Base Pairs	164,262,607
Golden Path Length	164,262,607
Assembly provider	US DOE Joint Genome Institute (JGI-PGF)
Annotation provider	NCBI
Annotation method	Import
Genebuild started	Dec 2022
Genebuild released	Dec 2022
Genebuild last updated/patched	Dec 2022
Database version	110.1

Gene counts

Gene/transcipt that contains an open reading frame (ORF).Coding genes	20,215
Non coding genes	5,447
Small non coding genes	112
Long non coding genes	5,333
Misc non coding genes	2
A gene that has homology to known protein-coding genes but contain a frameshift and/or stop codon(s) which disrupts the ORF. Thought to have arisen through duplication followed by loss of function.Pseudogenes	294
A transcript is the operational unit of a gene. In a genomic context, transcripts consist of one or more exons, with adjoining exons being separated by introns. The exons/introns are transcribed and then the introns spliced out. Transcripts may or may not encode a proteinGene transcripts	31,078

Personal Data